Pusat Genom Pertanian Indonesia (PGPI)

Reading Genomes, designing the Future!

The genetic information contained in every cell of living things can be the key to various commodity breeding. Various types of genes, molecular markers and genome variations can be associated with superior traits and are used as breeding targets.

The Indonesian Center for Agricultural Genome (Pusat Genom Pertanian Indonesia / PGPI) is a website that has become a data center point and network for genomics and bioinformatics research, especially in agriculture.

At this website, whole genome sequences from various Indonesian agricultural germplasm are available, complete with identified gene content and genomic variations.

Read the Genome DNA Sequence by ATGC!

Genome browser is a graphical interface for displaying of information from a biological database for genomic data. Genome browsers enable researchers to visualize and browse entire genomes with annotated data including gene prediction and structure, proteins, expression, regulation, variation, comparative analysis, etc.

It takes typically very large files, such as whole genome FASTA files and displays them in a way that we users can make sense of the information there.

Available data sets:

Physic nut (Jatropha curcas L.)
Physic nut (Jatropha curcas L.) – Cloroplast
Cocoa (Theobroma cacao L.)
Palm oil (Elaeis guineensis Jacq.)
Potato (Solanum tuberosum L.)
Chili-pepper (Capsicum spp.)
Banana (Musa paradisiaca L.)
Soybean (Glycine max L. Merr.)
Mays (Zea mays L.)
Cow (Bos taurus)

Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development (ICABIOGRAD), IAARD, Ministry of Agriculture, Indonesia.
Indonesian Palm Crops Research Institute (IPCRI), IAARD , Ministry of Agriculture, Indonesia.
Indonesian Oil Palm Research Institute (IOPRI), Indonesia.
Indonesian Industrial and Freshener Crops Research Institute (IFCRI), IAARD, Indonesia.
Indonesian Vegetables Research Institute (IVEGRI), IAARD, Ministry of Agriculture, Indonesia.
Indonesian Tropical Fruits Research Institute (ITFRI), IAARD, Ministry of Agriculture, Indonesia.
Indonesian Research Institute for Animal Production (IRIAP), IAARD, Ministry of Agriculture, Indonesia.
Indonesian Cattle Research Station, IAARD, Ministry of Agriculture, Indonesia.
Bogor Agriculture University, Indonesia.
Seoul National University, South Korea.
Kasetsart University, Thailand.

Let’s work together!

Revealing all the secrets of the agricultural genome is not a simple matter. Idea, creativity, your expertise in agriculture can play a role in it.
Do you have a unique agricultural germplasm?
Do you note the genealogy of crosses and phenotypes?
Are you a computer and statistics expert?

Let’s read the agricultural genome together!

Contact us:
Tel. +62-251-8337975
E-mail: indonesia-genome@pertanian.go.id